Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015940138.1_cds_XP_016484460.1_75477
CDS Infomation

[gene=LOC107805002] [db_xref=GeneID:107805002] [protein=pheophorbide a oxygenase, chloroplastic-like] [protein_id=XP_016484460.1] [location=join(46619..47074,47453..47688,47940..48066,51525..51661,52087..52246,53277..53555,53745..53999)] [gbkey=CDS]
Sequence

ATGAAAAAATTCATTAGCTCAGCTCAATTTCATCACATTAACCCAATGGCTTCTTCTCTA
TTATACTCTCCACCACCAACTCCTCAAATTCTTTCACTTTCTTCTTCCTTTCATTCTTCT
CTCCCTACTAAAACCCAATTTTTTTATCAAAGTAAAAGAAGAAAAAGAAGGCCAATTTCA
ACTCCTCTTAGAGTAGCTTCACCCCCAACAACACCTTCCACTAACACCACTAATGATATT
GATGAAGTAAATACACAAGATGATGAACAAGATTCATCCTCAAAATTCTCTTGGAGAGAT
CATTGGTACCCAGTTTCTTTAGTTGAAGATCTTGACCCTAATTCACCTACCCCGTTTCAG
CTCCTCAATCGAGACTTAGTTCTCTGGTTTGATAAATCTAACTCTCAGTGGGTTGCTTTT
GATGACAAATGCCCTCATCGCCTTGCTCCTTTATCAGAAGGGAGAATAGATGAAAATGGG
GATTTGCAGTGTTCATATCATGGATGGTCATTTAATGGATGTGGATCTTGTACAAGGATA
CCTCAGGCTGCATCTGAAGGACCTGAAGCTAAAGCTGTTCAATCTCCAAGGGCATGTGCT
ACTAGATTTCCTACTATGGTTTCTCAAGGATTACTCTTTGTTTGGCCTGATGAGAATGCT
TGGGAGAGAGCTCAAGAAACTAAAGCCCCTATGTTGCCTGAAGATTTTGATAAGCCTGAG
TTTGCAACAGTGACAATTCAGCGCGATTTGTTTTATGGCTATGATACTCTCATGGAGAAT
GTCTCTGATCCTTCTCACATCGAGTTTGCGCATCACAAGGTTACTGGAAGGCGAGATAGA
GCCAAGCCCTTGCCATTTAAGATGGAGGCATCTGGACCGTGGGGTTTTGCAGGTGCAAAC
AATGATAAACCAAAAATTACTGCAAAGTTTGTTGCACCTTGTTACTCCATGAATAAAATA
GAGATTGACACAAAGCTTCCAATCGTCGGTGATCAGAAGTGGGTTATATGGATTTGTTCT
TTTAATGTACCAATGGCACCTGGAAAGACCCGATCAATTGTTTGTAGTGCTCGAAACTTC
TTCCAGTTTACAGTGCCTGGGCCTGCTTGGTGGCAGGTTTTTCCTAGATGGCAAGAACAC
TGGACTTCGAATAAGGTGTATGATGGGGATATGATTGTTCTTCAAGGGCAAGAGAAGATC
TTTCTTGCAAAGTCAAAGGAGAATTCTACTGATGTCAACAAGGAGTACACAAAACTCACA
TTTACACCCACTCAAGCTGATCGCTTCGTCTTGGCATTTCGAAATTGGCTTAGACGGCAT
GGCAATAGTCAACCTGAATGGTTTGGTAACGTAGACCAACCACCATTGCCATCTACAGTC
TTATCCAAACGCCAGATGATGGATAGATTCGAGCAACATACACTCAAGTGTTCATCTTGC
AGAAATGCTTACTACACATTCGAGAGATTGCAAAAGATTCTGATTGGCGCCGTAGTGGTG
TTCTGCGCAACTGCAGGTATTCCTTCTGATATCAAGCTGCGTGTTATCTTGGCTTCATTT
GCAGTTTTAAGTGCCGGATTGGCATACGCCCTCCACGAACTGCAGAAGAATTTTGTATTT
GTTGATTATGTACATGCAGAAATTGATTAA

Peptide Sequence

PEP ID

XP_016484460.1
PEP Infomation

PREDICTED: pheophorbide a oxygenase, chloroplastic-like [Nicotiana tabacum]
Sequence

MKKFISSAQFHHINPMASSLLYSPPPTPQILSLSSSFHSSLPTKTQFFYQSKRRKRRPIS
TPLRVASPPTTPSTNTTNDIDEVNTQDDEQDSSSKFSWRDHWYPVSLVEDLDPNSPTPFQ
LLNRDLVLWFDKSNSQWVAFDDKCPHRLAPLSEGRIDENGDLQCSYHGWSFNGCGSCTRI
PQAASEGPEAKAVQSPRACATRFPTMVSQGLLFVWPDENAWERAQETKAPMLPEDFDKPE
FATVTIQRDLFYGYDTLMENVSDPSHIEFAHHKVTGRRDRAKPLPFKMEASGPWGFAGAN
NDKPKITAKFVAPCYSMNKIEIDTKLPIVGDQKWVIWICSFNVPMAPGKTRSIVCSARNF
FQFTVPGPAWWQVFPRWQEHWTSNKVYDGDMIVLQGQEKIFLAKSKENSTDVNKEYTKLT
FTPTQADRFVLAFRNWLRRHGNSQPEWFGNVDQPPLPSTVLSKRQMMDRFEQHTLKCSSC
RNAYYTFERLQKILIGAVVVFCATAGIPSDIKLRVILASFAVLSAGLAYALHELQKNFVF
VDYVHAEID

Transcript Sequence

Gene sequence data has not been registered.